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Publications

2010

Kim, Han Suk, JÃŒrgen P Schulze, Angela C Cone, Gina E Sosinsky and Maryann E Martone. Dimensionality reduction on multi-dimensional transfer functions for multi-channel volume data sets. Information Visualization 9, 167-180 (Autumn 2010).


2009

Larson SD, Martone ME. Ontologies for Neuroscience: What are they and What are they Good for? Front Neurosci. 2009 May;3(1):60-7. Epub 2009 May 1.


2008

Martone ME, Tran J, Wong WW, Sargis J, Fong L, Larson S, Lamont SP, Gupta A, Ellisman MH. The Cell Centered Database project: An update on building community resources for managing and sharing 3D imaging data. J Struct Biol. 2008 Mar; 161(3):220-31. Epub 2007 Oct 16. PMID: 18054501


2007

Fong LL, Larson SD, Gupta A, Condit C, Bug WJ, Chen L, West R, Lamont S, Terada M, Martone ME (2007). "An Ontology-Driven Knowledge Environment for Subcellular Neuroanatomy," OWL: Experiences and Directions, Innsbruck, Austria, CEUR Workshop Proceedings, ISSN 1613-0073, http://CEUR-WS.org/Vol-258/, June 6-7, 2007



Larson S, Fong L, Gupta A, Condit C, Bug W, Martone M (2007). A formal ontology of subcellular neuroanatomy.
Front. Neuroinform. 1:3. doi:10.3389/neuro. 11/003. 2007



Larson SD, Martone ME (2007) "Rule-Based Reasoning with a Multi-Scale Neuroanatomical Ontology," OWL: Experiences and Directions, Innsbruck, Austria, CEUR Workshop Proceedings, ISSN 1613-0073, http://CEUR-WS.org/Vol-258/, June 6-7, 2007


Martone ME, Sargis J, Tran J, Wong WW, Jiles H, Mangir C (2007). Database resources for cellular electron microscopy. Methods Cell Biol. 79:799-822. PMID: 17327184


2006

Price DL, Chow SK, Maclean NA, Hakozaki H, Peltier S, Martone ME, Ellisman MH (2006). High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders. Neuroinformatics. 4(1):65-80. PMID: 16595859


2005

Sosinsky GE, Deerinck TJ, Greco R, Buitenhuys CH, Bartol TM, Ellisman MH (2005). Development of a model for microphysiological simulations: small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography. Neuroinformatics. 3(2):133-62.



2004

Martone ME, Gupta A, Ellisman MH (2004). E-neuroscience: challenges and triumphs in integrating distributed data from molecules to brains. Nat Neurosci. 7(5):467-472.



2003

Martone ME, Zhang S, Gupta A, Qian X, He H, Price DL, Wong M, Santini S, Ellisman MH (2003). The cell-centered database: a database for multiscale structural and protein localization data from light and electron microscopy. Neuroinformatics. 1(4):379-375.



Zhang S, Price D, Qian X, Gupta A, Ellisman MH, Martone ME. A cell centered database (CCDB) for multi-scale microscopy data management. Microscopy and Microanalysis; August 3-7, 2003; San Antonio, TX.


Zhang S, Qian X, Gupta A, Martone ME. A practical approach for microscopy imaging data management (MIDM). Neuroscience, 15th International Conference on Scientific and Statistical Database Management, July 9-11, 2003; Cambridge, MA.


2002

Martone ME, Gupta A, Ludaescher B, Zaslavsky I, Ellisman MH (2002). Federation of brain data through knowledge-guided mediation In Kotter R, ed. Neuroscience Databases: A Practical Guide. Boston: Kluwer Academic Press, 275-292.



Martone ME, Gupta A, Qian X, Wong M, Zhang S, Ludaescher B, Zaslavsky I, Martinez-Price D, Ellisman MH (2002). The cell centered database: An online resource for high resolution cell level data, Soc for Neurosci Abstr.


Martone ME, Gupta A, Wong M, Qian X, Sosinsky G, Ludaescher B, Ellisman MH (2002). A cell centered database for electron tomographic data. J Struct Biol. 138:145-155.