Alternate header for print version


Reconstruction
Display image description
Continuity rendering of reconstructed DT-MRI dataset.
Full resolution image description
Data dump text file from AFNI. Columns are as follows: 1-Voxel number; 2-x voxel; 3-y voxel; 4-z voxel; 5-Dxx; 6-Dxy; 7-Dyy; 8-Dxz; 9-Dyz; 10-Dzz; 11-lambda1; 12-lambda2; 13-lambda3; 14-evec11; 15-evec12; 16-evec13; 17-evec21; 18-evec22; 19-evec23; 20-evec31; 21-evec32; 22-evec33; 23-Fractional anisotropy; 24-Mean diffusivity;
File format
MRC

Image 2D
Display image description
Computed axial slices through the left ventricle of a normal rat imaged using diffusion tensor imaging
Full resolution image description
All of the MRI data is located in this section. The file is a zipped folder that contains the in vivo MRI experiments and the DT MRI experiments from Florida. The in vivo folder contains the tagged and non-tagged images in BRIK format. The DT MRI folder contains the DT images in BRIK and NIFTI format as well the raw data.
Animation description
n/a

Segmentation
Display image description
Rat ventricle
Segmentation file description
In this section, all the segmentation for the in vivo scans and the DT scans. The file is a zipped folder that contains ITK snap segmentation files, and STL files. The ITK snap files are the segmentation image volumes and the STL files are the exported surface meshes of individual endo/epicardial surfaces.

License
Attribution Only: This image is licensed under a Creative Commons Attribution License. View License Deed | View Legal Code

CCDB:9449*  Cite 
Project: P2128
Project name
UCSD Virtual Rat Project
Description
High-resolution diffusion tensor MRI experiments of control and hypertenstive rats to determine fiber and sheet orientations on 17T scanner at Gainesville, Florida.
Leader(s)
Andrew D McCulloch
Collaborator(s)
Jeff Omens
Jennifer Stowe
Eric Carruth
Diane Huang
Start date
unspecified
End date
unspecified
 
Experiment
Experiment ID
9440
Title
DT-MRI
Purpose
Diffusion tensor images of control and hypertensive rat hearts scanned and prepared by Min Sig Hwaung at the University of Florida, Gainesville.
Experimenter(s)
Min Sig Hwaung
Microscopy product
Microscopy product ID
9449
Instrument
n/a
Microscopy type
MRI
Product type
MRI VOLUME
Image basename
Control
Spatial Axis Image Size Pixel Size
X 256px 60 um/pixels
Y 224px 60 um/pixels
Y 55px
Subject
Species
Rat
Scientific name
Rattus
Strain
Dahl/SS
Age
84 days
Age class
n/a
Specimen description
Organ
heart
System
cardiovascular
Imaging parameters
Type
Electron microscopy product
Recording medium
4K CCD
Magification
1
Energy filter type
na
Energy filter dispersion
na
Energy filter slit
na
Energy filter type
na
Accelerating voltage
1 1
Notes
na
Imaging product type
Type
Serial section
Cutting plane
Axial
Description
DT-MRI