Specimen Preparation Information
Microscopy product ID: 1038
Image basename: 3wk-ly6
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Specimen Preparation
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Tissue group type
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NA
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Ext file name
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NA
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| Protocol used |
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Microscopy Product Information
Microscopy product ID: 1038
Image basename: 3wk-ly6
Microscopy product
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| Microscopy product id |
1038 |
| Image basename |
3wk-ly6 |
| Instrument |
Biorad Radiance2000
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| X Size |
1024
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| Y Size |
1024
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| Z Size |
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| X Resolution |
0.047436 um/pixel
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| Y Resolution |
0.047436 um/pixel
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| Z Resolution |
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| Create date |
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| PURL |
NA
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| Product type |
optical section series
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| Microscope type |
single photon confocal
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| Session name |
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| Grid box count |
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| Grid info. |
N/A
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| Slide info. |
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| Plane count |
0
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| SRB ID |
0
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Imaging Product Types
Microscopy product ID: 1038
Image basename: 3wk-ly6
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Optical section series
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| Optical PSF file |
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| Descriptions |
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| Optical Z resolution |
0.25 um |
| Cutting plane |
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Through focus series
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| Descriptions |
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| Through PSF file |
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| Z step |
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Specimen Description
Microscopy product ID: 1038
Image basename: 3wk-ly6
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Specimen description (1038, 3wk-ly6)
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| System |
central nervous system
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| Tissue |
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| Organ |
brain |
| Region |
hippocampus |
| Subregions |
CA1, stratum radiatum
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| Cell type |
protoplasmic astrocyte |
| Cell id |
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| Structure |
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| Atlas coordinates |
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| Atlas |
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| Map location |
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| Notes |
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Imaging Parameters
Microscopy product ID: 1038
Image basename: 3wk-ly6
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Light microscopy product (1038, 3wk-ly6)
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| Coverslip thickness |
1.0 um
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| Lens |
Nikon |
| Lens magnification |
60.0 X |
| Numerical aperture |
1.4 |
| Immersion medium |
oil |
| Mounting medium |
gelvatol |
| Refractive index |
1.5 |
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LM channels
| Confocal channel (10139) |
| Filter used |
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| Fluorophor |
Lucifer Yellow |
| Color |
Green
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| Excitation wave length |
428.0 nm |
| Emission wave length |
536.0 nm |
| Laser type |
Krypton-Argon |
| Notes |
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Specimen preparations
View complete protocol
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2D Image Information
Microscopy product ID: 1038
Image basename: 3wk-ly6
Reconstruction Information
Microscopy product ID: 1038
Image basename: 3wk-ly6
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Reconstruction description
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Reconstruction description
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Full-resolution reconstruction file
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Down-sampled version of the reconstruction file
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| Image map file |
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Reconstruction file format
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| Volume dimension |
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| Voxel scale |
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| Animation
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No animation available.
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| Data files |
| Action |
File type |
File size |
Description |
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Download
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512x512 image
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Unknown
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Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
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Download
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Reconstruction data file
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85.62MB
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Not available
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Description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
Description: Optical section series through a protoplasmic astrocyte in rat hippocampal area CA1 intracellulaly injected Lucifer Yellow and imaged with confocal microscopy
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Segmentation Information
Microscopy product ID: 1038
Image basename: 3wk-ly6
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| Message |
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No segmentation data is available for this data set yet.
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